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- First-/Corresponding-authored
- J. He. "Improving Feature Representation of Natural Language Gene Functional Annotations Using Automatic Term Expansion". In Proceedings of IEEE Symposium on Computational Intelligence in Bioinformatics and Computational Biology (CIBCB). 2008. Accepted for publication.
J. He, X. Dai, and X. Zhao. "Mixture Model Adaptive Neural Network for Mining Gene Functional Patterns from Heterogeneous Knowledge Domains". International Journal of Information Technology and Intelligent Computing. 2007. Accepted for publication.
J. He, X. Dai, and X. Zhao. "PLAN: A web platform for automating high-throughput BLAST searches and for managing and mining results". BMC Bioinformatics. 8:53, 2007. ("Highly Accessed" at BMC Open Access).
J. He, X. Dai, and X. Zhao. "Associative Artificial Neural Network for Discovery of Highly Correlated Gene Groups Based on Gene Ontology and Gene Expression". In Proceedings of IEEE Symposium on Computational Intelligence in Bioinformatics and Computational Biology (CIBCB). p17--24. 2007.
J. He, X. Dai, and X. Zhao. "A Systematic Computational Approach for Transcription Factor Target Gene Prediction". In Proceedings of IEEE Symposium on Computational Intelligence in Bioinformatics and Computational Biology (CIBCB). p385--391. 2006.
- Co-authored
- V. Benedito, I. Torez-Jerez, J. Murray, A. Andriankaja, S. Allen, K. Kakar, M. Wandrey, J. Verdier, H. Zuber, T. Ott, S. Moreau, A. Niebel, T. Frickey, G. Weiller, J. He, X. Dai, P. Zhao, Y. Tang, and M. Udvardi. "A gene expression atlas of the model legume Medicago truncatula". The Plant Journal. 2008. Accepted for publication.
MA Rouf Mian, Y. Zhang, Z.-Y. Wang, J.-Y. Zhang, X. Cheng, L. Chen, K. Chekhovskiy, X. Dai, C. Mao, F. Cheung, X. Zhao, J. He, A.D. Scott, C.D. Town and G.D. May. "Analysis of tall fescue ESTs representing different abiotic stresses, tissue types and developmental stages". BMC Plant Biology. 8:27, 2008.
M. Tadege, J. Wen, J. He, H. Tu, Y. Kwak, P. Zhao, P. Ratet and K.S. Mysore. "Large scale insertion Mutagenesis using Tnt1 retrotransposon in the model legume Medicago truncatula". The Plant Journal. 52(2):335-347, 2008.
M. Naoumkina, I. Torres-Jerez, S. Allen, J. He, P. Zhao, R.A. Dixon and G.D. May. "Analysis of cDNA libraries from developing seeds of guar (Cyamopsis tetragonoloba (L.) Taub)". BMC Plant Biology. 7:62, 2007.
A.K. Broz, C.D. Broeckling, J. He, X. Dai, P.X. Zhao, and J.M. Vivanco. "A first step in understanding an invasive weed through its genes: an EST analysis of invasive Centaurea maculosa". BMC Plant Biology. 7:25, 2007.
X. Dai, J. He, and X. Zhao. "A New Systematic Computational Approach to Predicting Target Genes of Transcription Factors". Nucleic Acids Research. 35(13):4433-4440, 2007.
V.A. Benedito, X. Dai, J. He, P.X. Zhao, and M.K. Udvardi. "Functional Genomics of Plant Transporters in Legume Nodules". Functional Plant Biology. 33(8), p731â736, 2006.