The Samuel Roberts Noble Foundation, Inc.    
     
The Sumner Group: Functional Genomics References
 
 
     

Functional Genomics References

  1. Venter, J.C., The human genome, Science, 2001, 291, 1304-1351
  2. King, R.D., Karwath, A., Clare, A., Dehaspe, L., Accurate prediction of protein functional class from sequence in Mycobacterium tuberculosis and Escherichia coli genomes using data mining, Yeast, 2000, 17, 283-293.
  3. Hieter, P., Boguski, M., Functional genomics: Its all how you read it, Science, 1997, 278, 601-602.
  4. Ideker, T., Thorsson, V., Ranish, J.A., Christmas, R., Buhler, J., Eng, J.K., Bumgarner, R., Goodlett, D.R., Aebersold, R., Hood, L.,Integrated genomic and proteomics analyses of a systematically perturbed metabolic network, Science, 2001, 292, 929-934.
  5. Blackstock, W.P., Weir, M.P., Proteomics: quantitative and physical mapping of cellular protiens, Trends in Biotech., 1999, 17, 121-127.
  6. Thiellement, H., Bahrman, N., Damerval, C., Plomion, C., Rossingnol, M., Santoni, V., de Vienne, D., Zivy, M., Proteomics for genetic and physiological studies in plants, Electrophoresis, 1999, 20, 2013-2026.
  7. Fiehn, O., Kopka, J., Dormann, P., Altmann, T., Trethewey, R.N., Willmitzer, L., Metabolite profiling for plant functional genomics, Nature Biotechnol., 2000, 18, 1157-1161.
  8. Trethewey, R.N., Krotzky, A.J., Willmitzer, L.,Metabolic profiling: A Rosetta stone for genomics?, Curr. Opin. Plant Biol., 1999, 2, 83-85.
  9. Trethewy, R.N., Gene discovery via metabolic profiling, Current Opin. Biotechnol., 2001, 12, 135-138.
  10. Schena, M., Shalon, D., Davis, R.W., Brown, P.O.,Quantitative monitoring of gene expression patterns with a complementary DNA microarray, Science, 1995, 270, 467-469.
  11. Velculescu, V.E., Zhang, L., Vogelstein, B., Kinzlet, K.W.,Serial analysis of gene expression, Science, 1995, 270, 484-487.
  12. O'Farrell, P.H., High resolution two-dimensional electrophoresis of proteins, J. Biol. Chem., 1975, 250, 4007-4021.
  13. Klose, J., Protein mapping by combined isoelectric focusing and electrophoresis of mouse tissues. A novel approach to testing for induced point mutations in mammals, Humangenetik, 1975, 26, 231-243.
  14. Klose, J., Kobalz, U., Two-dimensional electrophoresis of proteins: An updated protocol and implications for a funcitonal analysis of the genome, Electrophoresis, 1995, 16, 1034-1059.
  15. Jungblut, P.R., Zimmy-Arndt, U., Zeindl-Eberhart, E., Stulik, J., Koupilova, K., Pleissner, K.P., Otto, A., Muller, E.C., Sokolowska-Kohler, W., Grabher, G., Stoffler, G., Proteomics in human disease: Cancer, heart and infectious disease, Electrophoresis, 1999, 20, 2100-2110.
  16. van Wijk, K.J., Challenges and prospects of plant proteomics, Plant Physiol., 2001, 126, 501-508.
  17. Morris, A.C., Djordevic, M.A., Proteome analysis of cultivar-specific interactions between Rhizobium leguminosarum biovar trifolii and subterranean clover cultivar Woogenenellup, Electrophoresis, 2001, 22, 586-598.
  18. Pappin, D.J.C., Hojrup, P., Bleasby, A.J., Rapid identification of proteins by peptide-mass fingerprinting, Curr. Biol., 1993, 3, 327-332.
  19. Arnott, D., O'Connell, K.L., King, K.L., Stults, J.T., An integrated approach to proteome analysis: Identification of proteins associated with cardiac hypertrophy, Anal. Biochem., 1998, 258, 1-18.
  20. Yates III, J.R., Mass spectrometry and the age of the proteome, J. Am. Soc. Mass Spectrom., 1998, 33, 1-19.
  21. Godovac-Zimmermann, J., Brown, L.R., Perspectives for mass spectrometry and functional proteomics, Mass Spec. Rev., 2001, 20, 1-57.
  22. Conrads, T.P., Anderson, G.A., Veenstra, T.D., Pasa-Tolic, L., Smith, R.D., Utility of accurate mass tags for proteome-wide protein identification, Anal. Chem., 2000, 72, 3349-3354.
  23. Clauser, K.R., Baker, P., Burlingame, A.L., Role of accurate mass measurement (±10 ppm) in protein identification strategies employing MS or MS/MS and database searching, Anal. Chem., 1999, 71, 2871-2882.
  24. Gygi, S.P., Rist, B., Gerber, S.A., Turecek, F., Gelb, M.H., Aebersold, R., Quantitative analysis of complex protein mixtures using isotope-coded affinity tags, Nature Biotechnol., 1999, 17, 994-999.
  25. COOK, D.R., Medicago truncatula - a model in the making! Current Opinion in Plant Biology, 1999, 2, 301-304.
 
         
       
© 1997-2008 by The Samuel Roberts Noble Foundation, Inc.