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Sumner Home Personnel Projects Mass Spec Basics Functional Genomics Proteomics Metabolomics Fundamental MS Instrumentation Publications Protocols MedicCyc MSFACTs MET-IDEA Downloads Group Activities Links Employment Secure Pages Visiting Scientists Collaborators Outreach Acknowledgments
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Functional Genomics References
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- King, R.D., Karwath, A., Clare, A., Dehaspe, L., Accurate prediction of protein functional class from sequence in Mycobacterium tuberculosis and Escherichia coli genomes using data mining, Yeast, 2000, 17, 283-293.
- Hieter, P., Boguski, M., Functional genomics: Its all how you read it, Science, 1997, 278, 601-602.
- Ideker, T., Thorsson, V., Ranish, J.A., Christmas, R., Buhler, J., Eng, J.K., Bumgarner, R., Goodlett, D.R., Aebersold, R., Hood, L.,Integrated genomic and proteomics analyses of a systematically perturbed metabolic network, Science, 2001, 292, 929-934.
- Blackstock, W.P., Weir, M.P., Proteomics: quantitative and physical mapping of cellular protiens, Trends in Biotech., 1999, 17, 121-127.
- Thiellement, H., Bahrman, N., Damerval, C., Plomion, C., Rossingnol, M., Santoni, V., de Vienne, D., Zivy, M., Proteomics for genetic and physiological studies in plants, Electrophoresis, 1999, 20, 2013-2026.
- Fiehn, O., Kopka, J., Dormann, P., Altmann, T., Trethewey, R.N., Willmitzer, L., Metabolite profiling for plant functional genomics, Nature Biotechnol., 2000, 18, 1157-1161.
- Trethewey, R.N., Krotzky, A.J., Willmitzer, L.,Metabolic profiling: A Rosetta stone for genomics?, Curr. Opin. Plant Biol., 1999, 2, 83-85.
- Trethewy, R.N., Gene discovery via metabolic profiling, Current Opin. Biotechnol., 2001, 12, 135-138.
- Schena, M., Shalon, D., Davis, R.W., Brown, P.O.,Quantitative monitoring of gene expression patterns with a complementary DNA microarray, Science, 1995, 270, 467-469.
- Velculescu, V.E., Zhang, L., Vogelstein, B., Kinzlet, K.W.,Serial analysis of gene expression, Science, 1995, 270, 484-487.
- O'Farrell, P.H., High resolution two-dimensional electrophoresis of proteins, J. Biol. Chem., 1975, 250, 4007-4021.
- Klose, J., Protein mapping by combined isoelectric focusing and electrophoresis of mouse tissues. A novel approach to testing for induced point mutations in mammals, Humangenetik, 1975, 26, 231-243.
- Klose, J., Kobalz, U., Two-dimensional electrophoresis of proteins: An updated protocol and implications for a funcitonal analysis of the genome, Electrophoresis, 1995, 16, 1034-1059.
- Jungblut, P.R., Zimmy-Arndt, U., Zeindl-Eberhart, E., Stulik, J., Koupilova, K., Pleissner, K.P., Otto, A., Muller, E.C., Sokolowska-Kohler, W., Grabher, G., Stoffler, G., Proteomics in human disease: Cancer, heart and infectious disease, Electrophoresis, 1999, 20, 2100-2110.
- van Wijk, K.J., Challenges and prospects of plant proteomics, Plant Physiol., 2001, 126, 501-508.
- Morris, A.C., Djordevic, M.A., Proteome analysis of cultivar-specific interactions between Rhizobium leguminosarum biovar trifolii and subterranean clover cultivar Woogenenellup, Electrophoresis, 2001, 22, 586-598.
- Pappin, D.J.C., Hojrup, P., Bleasby, A.J., Rapid identification of proteins by peptide-mass fingerprinting, Curr. Biol., 1993, 3, 327-332.
- Arnott, D., O'Connell, K.L., King, K.L., Stults, J.T., An integrated approach to proteome analysis: Identification of proteins associated with cardiac hypertrophy, Anal. Biochem., 1998, 258, 1-18.
- Yates III, J.R., Mass spectrometry and the age of the proteome, J. Am. Soc. Mass Spectrom., 1998, 33, 1-19.
- Godovac-Zimmermann, J., Brown, L.R., Perspectives for mass spectrometry and functional proteomics, Mass Spec. Rev., 2001, 20, 1-57.
- Conrads, T.P., Anderson, G.A., Veenstra, T.D., Pasa-Tolic, L., Smith, R.D., Utility of accurate mass tags for proteome-wide protein identification, Anal. Chem., 2000, 72, 3349-3354.
- Clauser, K.R., Baker, P., Burlingame, A.L., Role of accurate mass measurement (±10 ppm) in protein identification strategies employing MS or MS/MS and database searching, Anal. Chem., 1999, 71, 2871-2882.
- Gygi, S.P., Rist, B., Gerber, S.A., Turecek, F., Gelb, M.H., Aebersold, R., Quantitative analysis of complex protein mixtures using isotope-coded affinity tags, Nature Biotechnol., 1999, 17, 994-999.
- COOK, D.R., Medicago truncatula - a model in the making! Current Opinion in Plant Biology, 1999, 2, 301-304.
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